HL_9HM0_064

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

9HM0|1|r|C|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_064 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.2531

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9HM0|1|r|A|962
9HM0|1|r|G|963
9HM0|1|r|C|964
9HM0|1|r|A|965
9HM0|1|r|A|966
9HM0|1|r|U|967

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain O

Small ribosomal subunit protein uS15m