HL_9HM0_065
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUAAUCCAC
- Length
- 10 nucleotides
- Bulged bases
- 9HM0|1|r|A|1036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HM0_065 not in the Motif Atlas
- Homologous match to HL_6CZR_092
- Geometric discrepancy: 0.3286
- The information below is about HL_6CZR_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|G|1028
9HM0|1|r|A|1029
9HM0|1|r|U|1030
9HM0|1|r|A|1031
9HM0|1|r|A|1032
9HM0|1|r|U|1033
9HM0|1|r|C|1034
9HM0|1|r|C|1035
9HM0|1|r|A|1036
9HM0|1|r|C|1037
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9m
- Chain J
- Small ribosomal subunit protein uS10m
- Chain t
- Transfer RNA; tRNA
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