HL_9HM0_069

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUA

Length

4 nucleotides

Bulged bases

9HM0|1|r|U|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_069 not in the Motif Atlas

Geometric match to HL_8SP9_002

Geometric discrepancy: 0.2175

The information below is about HL_8SP9_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9HM0|1|r|U|1199
9HM0|1|r|U|1200
9HM0|1|r|U|1201
9HM0|1|r|A|1202

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain A

Small ribosomal subunit protein bS1m

Chain I

Small ribosomal subunit protein uS9m

Chain T

Small ribosomal subunit protein bS21m

Chain Z

Small ribosomal subunit protein mS37