HL_9HMW_073

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AUCCCAUCAGAACU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HMW_073 not in the Motif Atlas

Geometric match to HL_9E6Q_068

Geometric discrepancy: 0.0843

The information below is about HL_9E6Q_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9HMW|1|C3|A|32
9HMW|1|C3|U|33
9HMW|1|C3|C|34
9HMW|1|C3|C|35
9HMW|1|C3|C|36
9HMW|1|C3|A|37
9HMW|1|C3|U|38
9HMW|1|C3|C|39
9HMW|1|C3|A|40
9HMW|1|C3|G|41
9HMW|1|C3|A|42
9HMW|1|C3|A|43
9HMW|1|C3|C|44
9HMW|1|C3|U|45

Current chains

Chain C3

Ribosomal RNA 5S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BK

Large ribosomal subunit protein uL18z

Chain BU

Large ribosomal subunit protein uL5z