HL_9E6Q_068

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUCUCAUCAGAACC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9E6Q|1|2|G|38
9E6Q|1|2|U|39
9E6Q|1|2|C|40
9E6Q|1|2|U|41
9E6Q|1|2|C|42
9E6Q|1|2|A|43
9E6Q|1|2|U|44
9E6Q|1|2|C|45
9E6Q|1|2|A|46
9E6Q|1|2|G|47
9E6Q|1|2|A|48
9E6Q|1|2|A|49
9E6Q|1|2|C|50
9E6Q|1|2|C|51

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AD

Large ribosomal subunit protein uL5

Chain AO

Large ribosomal subunit protein uL18