HL_9HMW_109
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- CAGUUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 9HMW|1|i2|U|17, 9HMW|1|i2|G|18, 9HMW|1|i2|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HMW_109 not in the Motif Atlas
- Homologous match to HL_5HR6_001
- Geometric discrepancy: 0.4981
- The information below is about HL_5HR6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9HMW|1|i2|C|13
9HMW|1|i2|A|14
9HMW|1|i2|G|15
9HMW|1|i2|U|16
9HMW|1|i2|U|17
9HMW|1|i2|G|18
9HMW|1|i2|G|19
9HMW|1|i2|G|20
9HMW|1|i2|A|21
9HMW|1|i2|G|22
Current chains
- Chain i2
- Transfer RNA Phe (GAA)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BU
- Large ribosomal subunit protein uL5z
Coloring options: