HL_9HQV_005
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CAGUAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_005 not in the Motif Atlas
- Geometric match to HL_1L9A_001
- Geometric discrepancy: 0.327
- The information below is about HL_1L9A_001
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
9HQV|1|SF|C|46
9HQV|1|SF|A|47
9HQV|1|SF|G|48
9HQV|1|SF|U|49
9HQV|1|SF|A|50
9HQV|1|SF|G|51
Current chains
- Chain SF
- SSU-6
Nearby chains
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain SA
- SSU-1
- Chain SK
- SSU-11
- Chain Ye
- mS121
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