HL_9HQV_008
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAUUGGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9HQV|1|SJ|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_008 not in the Motif Atlas
- Geometric match to HL_8CRE_212
- Geometric discrepancy: 0.2206
- The information below is about HL_8CRE_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9HQV|1|SJ|G|52
9HQV|1|SJ|A|53
9HQV|1|SJ|U|54
9HQV|1|SJ|U|55
9HQV|1|SJ|G|56
9HQV|1|SJ|G|57
9HQV|1|SJ|A|58
9HQV|1|SJ|U|59
9HQV|1|SJ|A|60
9HQV|1|SJ|C|61
9HQV|1|SJ|C|62
Current chains
- Chain SJ
- SSU-10
Nearby chains
- Chain Bg
- Putative ribosomal protein S11
- Chain SI
- SSU-9
- Chain SU
- SSU-21
- Chain TP
- tRNA E-site
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