HL_9HQV_011
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAUAGUCCAC
- Length
- 10 nucleotides
- Bulged bases
- 9HQV|1|SK|A|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_011 not in the Motif Atlas
- Geometric match to HL_4LFB_021
- Geometric discrepancy: 0.1717
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9HQV|1|SK|G|93
9HQV|1|SK|A|94
9HQV|1|SK|U|95
9HQV|1|SK|A|96
9HQV|1|SK|G|97
9HQV|1|SK|U|98
9HQV|1|SK|C|99
9HQV|1|SK|C|100
9HQV|1|SK|A|101
9HQV|1|SK|C|102
Current chains
- Chain SK
- SSU-11
Nearby chains
- Chain Be
- Putative ribosomal protein S9
- Chain Bf
- uS10m
- Chain SL
- SSU-12
- Chain SM
- SSU-13
- Chain SQ
- SSU-17
- Chain SR
- SSU-18
- Chain TP
- tRNA E-site
- Chain Yn
- AP2 domain transcription factor AP2IX-6
- Chain Yq
- mS133
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