HL_9HQV_014
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GUGAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_014 not in the Motif Atlas
- Geometric match to HL_5J7L_031
- Geometric discrepancy: 0.1359
- The information below is about HL_5J7L_031
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
9HQV|1|SU|G|31
9HQV|1|SU|U|32
9HQV|1|SU|G|33
9HQV|1|SU|A|34
9HQV|1|SU|A|35
9HQV|1|SU|C|36
Current chains
- Chain SU
- SSU-21
Nearby chains
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SJ
- SSU-10
- Chain SR
- SSU-18
- Chain Yu
- mS137
Coloring options: