HL_9HQV_015
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGUGAUAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_015 not in the Motif Atlas
- Geometric match to HL_7U2I_104
- Geometric discrepancy: 0.1917
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9HQV|1|TP|G|29
9HQV|1|TP|G|30
9HQV|1|TP|U|31
9HQV|1|TP|G|32
9HQV|1|TP|A|33
9HQV|1|TP|U|34
9HQV|1|TP|A|35
9HQV|1|TP|U|36
9HQV|1|TP|C|37
Current chains
- Chain TP
- tRNA E-site
Nearby chains
- Chain Be
- Putative ribosomal protein S9
- Chain SJ
- SSU-10
- Chain SK
- SSU-11
- Chain SM
- SSU-13
- Chain SQ
- SSU-17
- Chain SR
- SSU-18
- Chain Yn
- AP2 domain transcription factor AP2IX-6
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