HL_9HUQ_035

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUQ_035 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1834

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9HUQ|1|b|G|1281
9HUQ|1|b|U|1282
9HUQ|1|b|G|1283
9HUQ|1|b|A|1284
9HUQ|1|b|A|1285
9HUQ|1|b|A|1286
9HUQ|1|b|A|1287
9HUQ|1|b|G|1288
9HUQ|1|b|C|1289

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

Large ribosomal subunit protein bL17

Chain s

Large ribosomal subunit protein uL22