HL_9HY6_008

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_008 not in the Motif Atlas

Geometric match to HL_8B0X_034

Geometric discrepancy: 0.2431

The information below is about HL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65821.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9HY6|1|b|U|87
9HY6|1|b|G|88
9HY6|1|b|A|89
9HY6|1|b|U|90
9HY6|1|b|A|91
9HY6|1|b|U|92
9HY6|1|b|G|93
9HY6|1|b|A|94
9HY6|1|b|A|95

Current chains

Chain b

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL29

Chain t

Large ribosomal subunit protein uL23

Chain u

Large ribosomal subunit protein uL24