HL_9HY6_024

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9HY6|1|b|A|613, 9HY6|1|b|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_024 not in the Motif Atlas

Geometric match to HL_9E6Q_019

Geometric discrepancy: 0.2919

The information below is about HL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9HY6|1|b|C|611
9HY6|1|b|G|612
9HY6|1|b|A|613
9HY6|1|b|A|614
9HY6|1|b|U|615
9HY6|1|b|A|616
9HY6|1|b|G|617

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4