HL_9HY6_076
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9HY6|1|v|A|14, 9HY6|1|v|C|17, 9HY6|1|v|U|18, 9HY6|1|v|G|19, 9HY6|1|v|G|20, 9HY6|1|v|U|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HY6_076 not in the Motif Atlas
- Homologous match to HL_7YSE_001
- Geometric discrepancy: 0.1508
- The information below is about HL_7YSE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HY6|1|v|C|13
9HY6|1|v|A|14
9HY6|1|v|G|15
9HY6|1|v|C|16
9HY6|1|v|C|17
9HY6|1|v|U|18
9HY6|1|v|G|19
9HY6|1|v|G|20
9HY6|1|v|U|21
9HY6|1|v|A|22
9HY6|1|v|G|23
Current chains
- Chain v
- pro-tRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: