HL_9HYM_012

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9HYM|1|b|A|196, 9HYM|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HYM_012 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1436

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9HYM|1|b|G|194
9HYM|1|b|A|195
9HYM|1|b|A|196
9HYM|1|b|A|197
9HYM|1|b|C|198
9HYM|1|b|A|199
9HYM|1|b|U|200
9HYM|1|b|C|201

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain l

Large ribosomal subunit protein uL15