HL_9HYM_015

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9HYM|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HYM_015 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1195

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9HYM|1|b|C|305
9HYM|1|b|U|306
9HYM|1|b|G|307
9HYM|1|b|G|308
9HYM|1|b|A|309
9HYM|1|b|A|310
9HYM|1|b|A|311
9HYM|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

Large ribosomal subunit protein uL24