HL_9HYM_076
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9HYM|1|v|A|14, 9HYM|1|v|C|17, 9HYM|1|v|U|18, 9HYM|1|v|G|19, 9HYM|1|v|G|20, 9HYM|1|v|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HYM_076 not in the Motif Atlas
- Homologous match to HL_7YSE_001
- Geometric discrepancy: 0.1507
- The information below is about HL_7YSE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HYM|1|v|C|13
9HYM|1|v|A|14
9HYM|1|v|G|15
9HYM|1|v|C|16
9HYM|1|v|C|17
9HYM|1|v|U|18
9HYM|1|v|G|19
9HYM|1|v|G|20
9HYM|1|v|U|21
9HYM|1|v|A|22
9HYM|1|v|G|23
Current chains
- Chain v
- Peptidyl Pro-tRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: