HL_9I14_017

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9I14|1|L5|U|1179, 9I14|1|L5|C|1180, 9I14|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_017 not in the Motif Atlas

Homologous match to HL_8GLP_014

Geometric discrepancy: 0.1514

The information below is about HL_8GLP_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9I14|1|L5|G|1178
9I14|1|L5|U|1179
9I14|1|L5|C|1180
9I14|1|L5|C|1181
9I14|1|L5|C|1182
9I14|1|L5|C|1183

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10