HL_9I14_027

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9I14|1|L5|C|1676, 9I14|1|L5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_027 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.25

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9I14|1|L5|C|1675
9I14|1|L5|C|1676
9I14|1|L5|U|1677
9I14|1|L5|C|1678
9I14|1|L5|A|1679
9I14|1|L5|G|1680

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a