HL_9I14_080

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9I14|1|S2|A|500, 9I14|1|S2|C|502, 9I14|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_080 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1991

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9I14|1|S2|C|498
9I14|1|S2|G|499
9I14|1|S2|A|500
9I14|1|S2|C|501
9I14|1|S2|C|502
9I14|1|S2|C|503
9I14|1|S2|G|504

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24