HL_9I14_084

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|S2|A|957
9I14|1|S2|G|958
9I14|1|S2|G|959
9I14|1|S2|U|960
9I14|1|S2|G|961
9I14|1|S2|A|962
9I14|1|S2|A|963
9I14|1|S2|A|964
9I14|1|S2|U|965
9I14|1|S2|U|966

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain A4

mRNA

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14