HL_9I1W_054

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(UR3)AAACC(A2M)UAACG

Length

13 nucleotides

Bulged bases

9I1W|1|1|A|2596, 9I1W|1|1|C|2603

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|2592
9I1W|1|1|UR3|2593
9I1W|1|1|A|2594
9I1W|1|1|A|2595
9I1W|1|1|A|2596
9I1W|1|1|C|2597
9I1W|1|1|C|2598
9I1W|1|1|A2M|2599
9I1W|1|1|U|2600
9I1W|1|1|A|2601
9I1W|1|1|A|2602
9I1W|1|1|C|2603
9I1W|1|1|G|2604

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29