RNA 3D Hub //

9I1W Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9I1W_0011/1/39:46No text annotation
HL_9I1W_0021/1/70:75No text annotation
HL_9I1W_0031/1/91:97No text annotation
HL_9I1W_0041/1/131:134No text annotation
HL_9I1W_0051/1/188:195No text annotation
HL_9I1W_0061/1/202:206No text annotation
HL_9I1W_0071/1/210:218No text annotation
HL_9I1W_0081/1/271:280No text annotation
HL_9I1W_0091/1/296:305No text annotation
HL_9I1W_0101/1/350:355No text annotation
HL_9I1W_0111/1/375:380No text annotation
HL_9I1W_0121/1/456:461No text annotation
HL_9I1W_0131/1/534:539No text annotation
HL_9I1W_0141/1/589:593No text annotation
HL_9I1W_0151/1/628:637No text annotation
HL_9I1W_0161/1/674:682No text annotation
HL_9I1W_0171/1/695:700No text annotation
HL_9I1W_0181/1/717:722No text annotation
HL_9I1W_0191/1/745:750No text annotation
HL_9I1W_0201/1/826:831No text annotation
HL_9I1W_0211/1/858:867No text annotation
HL_9I1W_0221/1/892:900No text annotation
HL_9I1W_0231/1/940:945No text annotation
HL_9I1W_0251/1/1059:1066No text annotation
HL_9I1W_0261/1/1109:1115No text annotation
HL_9I1W_0271/1/1131:1138No text annotation
HL_9I1W_0301/1/1330:1340No text annotation
HL_9I1W_0311/1/1386:1391No text annotation
HL_9I1W_0321/1/1445:1453No text annotation
HL_9I1W_0331/1/1489:1495No text annotation
HL_9I1W_0341/1/1527:1532No text annotation
HL_9I1W_0351/1/1547:1554No text annotation
HL_9I1W_0361/1/1579:1588No text annotation
HL_9I1W_0371/1/1614:1619No text annotation
HL_9I1W_0381/1/1660:1668No text annotation
HL_9I1W_0391/1/1699:1705No text annotation
HL_9I1W_0401/1/1739:1746No text annotation
HL_9I1W_0411/1/1824:1831No text annotation
HL_9I1W_0421/1/1842:1848No text annotation
HL_9I1W_0431/1/1903:1908No text annotation
HL_9I1W_0441/1/2073:2077No text annotation
HL_9I1W_0451/1/2098:2108No text annotation
HL_9I1W_0461/1/2127:2133No text annotation
HL_9I1W_0471/1/2183:2188No text annotation
HL_9I1W_0481/1/2216:2226No text annotation
HL_9I1W_0491/1/2255:2263No text annotation
HL_9I1W_0501/1/2332:2341No text annotation
HL_9I1W_0511/1/2499:2504No text annotation
HL_9I1W_0521/1/2527:2533No text annotation
HL_9I1W_0531/1/2575:2583No text annotation
HL_9I1W_0541/1/2592:2604No text annotation
HL_9I1W_0551/1/2632:2640No text annotation
HL_9I1W_0561/1/2652:2659No text annotation
HL_9I1W_0571/1/2683:2691No text annotation
HL_9I1W_0581/1/2703:2708No text annotation
HL_9I1W_0591/1/2735:2743No text annotation
HL_9I1W_0601/1/2799:2807No text annotation
HL_9I1W_0611/1/2856:2863No text annotation
HL_9I1W_0621/1/2879:2885No text annotation
HL_9I1W_0631/1/2922:2927No text annotation
HL_9I1W_0641/1/2983:2988No text annotation
HL_9I1W_0651/1/3026:3031No text annotation
HL_9I1W_0661/1/3068:3082No text annotation
HL_9I1W_0671/1/3143:3148No text annotation
HL_9I1W_0681/1/3182:3190No text annotation
HL_9I1W_0691/1/3244:3252No text annotation
HL_9I1W_0701/1/3291:3294No text annotation
HL_9I1W_0711/3/32:45No text annotation
geometric
HL_9AXU_068
HL_01182.1
HL_9I1W_0721/3/36:41No text annotation
homologous
HL_4V9F_071
HL_59381.2
HL_9I1W_0731/3/87:92GNRA
homologous
HL_4V9F_072
HL_34789.4
HL_9I1W_0741/4/47:56No text annotation
HL_9I1W_0751/4/68:91No text annotation
HL_9I1W_0761/4/108:114No text annotation
HL_9I1W_0771/4/124:129No text annotation

Problematic loops

#loop idProblemSequence
HL_9I1W_024No text annotation
HL_9I1W_028No text annotation
HL_9I1W_029No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9I1W_0011/1/8:9,
1/4/150:152		No text annotation
IL_9I1W_0021/1/14:16,
1/4/144:145		No text annotation
IL_9I1W_0031/1/28:29,
1/1/57:59		No text annotation
IL_9I1W_0041/1/32:39,
1/1/46:54		No text annotation
IL_9I1W_0051/1/83:90,
1/1/98:104		No text annotation
IL_9I1W_0061/1/124:125,
1/1/140:145		No text annotation
IL_9I1W_0071/1/126:128,
1/1/137:139		No text annotation
IL_9I1W_0081/1/155:156,
1/1/253:255		No text annotation
IL_9I1W_0091/1/158:160,
1/1/250:251		No text annotation
IL_9I1W_0101/1/164:165,
1/1/241:246		No text annotation
IL_9I1W_0111/1/168:171,
1/1/235:238		No text annotation
IL_9I1W_0121/1/174:175,
1/1/230:232		No text annotation
IL_9I1W_0131/1/176:179,
1/1/226:229		No text annotation
IL_9I1W_0141/1/183:185,
1/1/198:199		No text annotation
IL_9I1W_0151/1/330:332,
1/4/25:26		No text annotation
IL_9I1W_0161/1/369:372,
1/1/383:396		No text annotation
IL_9I1W_0171/1/397:403,
1/4/13:19		No text annotation
IL_9I1W_0181/1/421:423,
1/1/617:619		No text annotation
IL_9I1W_0191/1/435:437,
1/1/481:483		No text annotation
IL_9I1W_0201/1/446:447,
1/1/470:472		No text annotation
IL_9I1W_0211/1/447:451,
1/1/466:470		No text annotation
IL_9I1W_0221/1/508:516,
1/1/558:565		No text annotation
IL_9I1W_0231/1/523:530,
1/1/543:551		No text annotation
IL_9I1W_0241/1/658:660,
1/1/772:774		No text annotation
IL_9I1W_0251/1/668:672,
1/1/684:688		No text annotation
IL_9I1W_0261/1/713:716,
1/1/723:727		No text annotation
IL_9I1W_0271/1/734:735,
1/1/761:763		No text annotation
IL_9I1W_0281/1/737:738,
1/1/757:759		No text annotation
IL_9I1W_0291/1/740:745,
1/1/750:755		No text annotation
IL_9I1W_0301/1/785:787,
1/1/920:922		No text annotation
IL_9I1W_0311/1/787:791,
1/1/913:920		No text annotation
IL_9I1W_0321/1/815:816,
1/1/841:843		No text annotation
IL_9I1W_0331/1/816:820,
1/1/837:841		No text annotation
IL_9I1W_0341/1/851:854,
1/1/870:872		No text annotation
IL_9I1W_0351/1/855:857,
1/1/868:869		No text annotation
IL_9I1W_0361/1/889:891,
1/1/901:905		No text annotation
IL_9I1W_0371/1/936:938,
1/1/947:949		No text annotation
IL_9I1W_0381/1/951:952,
1/1/1094:1096		No text annotation
IL_9I1W_0391/1/958:964,
1/1/1084:1088		No text annotation
IL_9I1W_0401/1/965:967,
1/1/1082:1083		No text annotation
IL_9I1W_0411/1/973:979,
1/1/1035:1041		No text annotation
IL_9I1W_0421/1/979:980,
1/1/1033:1035		No text annotation
IL_9I1W_0431/1/981:986,
1/1/1029:1032		No text annotation
IL_9I1W_0441/1/988:991,
1/1/1024:1027		No text annotation
IL_9I1W_0451/1/991:993,
1/1/1022:1024		No text annotation
IL_9I1W_0461/1/995:999,
1/1/1018:1020		No text annotation
IL_9I1W_0481/1/1052:1054,
1/1/1070:1072		No text annotation
IL_9I1W_0491/1/1057:1059,
1/1/1066:1067		No text annotation
IL_9I1W_0501/1/1103:1105,
1/1/1119:1121		No text annotation
IL_9I1W_0521/1/1150:1154,
1/1/1311:1315		No text annotation
IL_9I1W_0531/1/1156:1163,
1/1/1308:1309		No text annotation
IL_9I1W_0541/1/1163:1165,
1/1/1307:1308		No text annotation
IL_9I1W_0551/1/1170:1177,
1/1/1297:1302		No text annotation
IL_9I1W_0561/1/1177:1188,
1/1/1282:1297		No text annotation
IL_9I1W_0571/1/1190:1192,
1/1/1279:1280		No text annotation
IL_9I1W_0581/1/1201:1209,
1/1/1266:1270		No text annotation
IL_9I1W_0611/1/1359:1361,
1/1/1411:1414		No text annotation
IL_9I1W_0621/1/1368:1370,
1/1/1403:1404		No text annotation
IL_9I1W_0631/1/1371:1378,
1/1/1398:1402		No text annotation
IL_9I1W_0641/1/1381:1383,
1/1/1394:1395		No text annotation
IL_9I1W_0651/1/1427:1433,
1/1/2317:2322		No text annotation
IL_9I1W_0661/1/1475:1478,
1/1/1815:1816		No text annotation
IL_9I1W_0671/1/1484:1488,
1/1/1496:1498		No text annotation
IL_9I1W_0681/1/1515:1519,
1/1/1565:1570		No text annotation
IL_9I1W_0691/1/1598:1601,
1/1/1804:1806		No text annotation
IL_9I1W_0701/1/1603:1604,
1/1/1800:1802		No text annotation
IL_9I1W_0711/1/1604:1605,
1/1/1798:1800		No text annotation
IL_9I1W_0721/1/1607:1611,
1/1/1791:1796		No text annotation
IL_9I1W_0731/1/1625:1629,
1/1/1786:1790		No text annotation
IL_9I1W_0741/1/1634:1638,
1/1/1771:1781		No text annotation
IL_9I1W_0751/1/1641:1643,
1/1/1766:1768		No text annotation
IL_9I1W_0761/1/1649:1650,
1/1/1758:1760		No text annotation
IL_9I1W_0771/1/1650:1651,
1/1/1756:1758		No text annotation
IL_9I1W_0781/1/1655:1657,
1/1/1671:1673		No text annotation
IL_9I1W_0791/1/1674:1678,
1/1/1727:1732		No text annotation
IL_9I1W_0801/1/1682:1687,
1/1/1717:1723		No text annotation
IL_9I1W_0811/1/1691:1697,
1/1/1707:1713		No text annotation
IL_9I1W_0821/1/1863:1869,
1/1/2309:2312		No text annotation
IL_9I1W_0831/1/1875:1877,
1/1/2301:2303		No text annotation
IL_9I1W_0841/1/1878:1881,
1/1/2299:2300		No text annotation
IL_9I1W_0851/1/1878:1886,
1/1/2296:2300		No text annotation
IL_9I1W_0861/1/1881:1886,
1/1/2296:2299		No text annotation
IL_9I1W_0871/1/1898:1903,
1/1/1908:1914		No text annotation
IL_9I1W_0881/1/1920:1922,
1/1/2069:2071		No text annotation
IL_9I1W_0891/1/1927:1928,
1/1/2061:2064		No text annotation
IL_9I1W_0901/1/1931:1933,
1/1/2057:2058		No text annotation
IL_9I1W_0911/1/1933:1934,
1/1/2050:2057		No text annotation
IL_9I1W_0921/1/2091:2092,
1/1/2286:2288		No text annotation
IL_9I1W_0931/1/2119:2124,
1/1/2136:2143		No text annotation
IL_9I1W_0941/1/2159:2162,
1/1/2208:2209		No text annotation
IL_9I1W_0951/1/2163:2164,
1/1/2204:2207		No text annotation
IL_9I1W_0961/1/2167:2173,
1/1/2198:2201		No text annotation
IL_9I1W_0971/1/2174:2180,
1/1/2191:2197		No text annotation
IL_9I1W_0981/1/2239:2240,
1/1/2270:2273		No text annotation
IL_9I1W_0991/1/2240:2251,
1/1/2267:2270		No text annotation
IL_9I1W_1001/1/2354:2357,
1/1/2945:2947		No text annotation
IL_9I1W_1011/1/2359:2361,
1/1/2940:2943		No text annotation
IL_9I1W_1021/1/2372:2374,
1/1/2770:2771		No text annotation
IL_9I1W_1031/1/2375:2376,
1/1/2766:2769		No text annotation
IL_9I1W_1041/1/2386:2388,
1/1/2563:2566		No text annotation
IL_9I1W_1061/1/2483:2489,
1/1/2543:2546		No text annotation
IL_9I1W_1071/1/2573:2574,
1/1/2584:2586		No text annotation
IL_9I1W_1081/1/2625:2627,
1/1/2645:2649		No text annotation
IL_9I1W_1091/1/2673:2675,
1/1/2699:2700		No text annotation
IL_9I1W_1101/1/2677:2680,
1/1/2694:2697		No text annotation
IL_9I1W_1111/1/2729:2732,
1/1/2746:2747		No text annotation
IL_9I1W_1121/1/2782:2785,
1/1/2822:2826		No text annotation
IL_9I1W_1131/1/2785:2787,
1/1/2821:2822		No text annotation
IL_9I1W_1141/1/2787:2789,
1/1/2817:2821		No text annotation
IL_9I1W_1151/1/2794:2798,
1/1/2808:2812		No text annotation
IL_9I1W_1161/1/2835:2836,
1/1/2908:2910		No text annotation
IL_9I1W_1171/1/2837:2840,
1/1/2902:2907		No text annotation
IL_9I1W_1181/1/2840:2841,
1/1/2899:2902		No text annotation
IL_9I1W_1191/1/2848:2850,
1/1/2871:2873		No text annotation
IL_9I1W_1201/1/2850:2851,
1/1/2868:2871		No text annotation
IL_9I1W_1211/1/2877:2879,
1/1/2885:2887		No text annotation
IL_9I1W_1221/1/2919:2920,
1/1/2929:2931		No text annotation
IL_9I1W_1231/1/2962:2965,
1/1/3097:3102		No text annotation
IL_9I1W_1241/1/2970:2972,
1/1/2998:3000		No text annotation
IL_9I1W_1251/1/2976:2983,
1/1/2988:2994		No text annotation
IL_9I1W_1261/1/3005:3009,
1/1/3049:3052		No text annotation
IL_9I1W_1271/1/3012:3017,
1/1/3042:3046		No text annotation
IL_9I1W_1281/1/3021:3022,
1/1/3035:3038		No text annotation
IL_9I1W_1291/1/3061:3065,
1/1/3085:3089		No text annotation
IL_9I1W_1301/1/3118:3120,
1/1/3225:3227		No text annotation
IL_9I1W_1311/1/3121:3123,
1/1/3223:3224		No text annotation
IL_9I1W_1321/1/3130:3132,
1/1/3156:3157		No text annotation
IL_9I1W_1331/1/3133:3141,
1/1/3150:3155		No text annotation
IL_9I1W_1341/1/3168:3174,
1/1/3198:3203		No text annotation
IL_9I1W_1351/1/3176:3178,
1/1/3194:3196		No text annotation
IL_9I1W_1361/1/3241:3244,
1/1/3252:3255		No text annotation
IL_9I1W_1371/1/3259:3261,
1/1/3329:3330		No text annotation
IL_9I1W_1381/1/3265:3266,
1/1/3322:3325		No text annotation
IL_9I1W_1391/1/3269:3271,
1/1/3314:3319		No text annotation
IL_9I1W_1401/1/3273:3278,
1/1/3308:3312		No text annotation
IL_9I1W_1411/1/3281:3283,
1/1/3304:3305		No text annotation
IL_9I1W_1421/1/3283:3286,
1/1/3301:3304		No text annotation
IL_9I1W_1431/1/3290:3291,
1/1/3294:3297		No text annotation
IL_9I1W_1441/3/15:16,
1/3/63:65		No text annotation
geometric
IL_9AXU_125
IL_14190.2
IL_9I1W_1451/3/21:27,
1/3/53:58		No text annotation
geometric
IL_8QYX_166
IL_41504.1
IL_9I1W_1461/3/28:29,
1/3/48:52		No text annotation
IL_9I1W_1471/3/32:36,
1/3/41:45		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_9I1W_1481/3/72:79,
1/3/99:105		No text annotation
geometric
IL_8QYX_169
IL_62167.3
IL_9I1W_1491/3/83:86,
1/3/93:95		Isolated non-canonical cWW pair
geometric
IL_8OI5_140
IL_01003.3
IL_9I1W_1501/4/64:66,
1/4/93:96		No text annotation

Problematic loops

#loop idProblemSequence
IL_9I1W_047No text annotation
IL_9I1W_051No text annotation
IL_9I1W_059No text annotation
IL_9I1W_060No text annotation
IL_9I1W_105No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9I1W_0011/1/114:124,
1/1/145:154,
1/1/256:260		No text annotation
J3_9I1W_0021/1/114:125,
1/1/140:154,
1/1/256:260		No text annotation
J3_9I1W_0031/1/180:183,
1/1/199:208,
1/1/220:225		No text annotation
J3_9I1W_0041/1/333:349,
1/1/356:361,
1/4/21:24		No text annotation
J3_9I1W_0051/1/362:369,
1/1/396:397,
1/4/19:20		No text annotation
J3_9I1W_0061/1/362:372,
1/1/383:397,
1/4/19:20		No text annotation
J3_9I1W_0071/1/428:434,
1/1/484:486,
1/1/606:612		No text annotation
J3_9I1W_0081/1/493:494,
1/1/579:588,
1/1/594:599		No text annotation
J3_9I1W_0091/1/796:802,
1/1/887:889,
1/1/905:908		No text annotation
J3_9I1W_0101/1/810:813,
1/1/845:849,
1/1/874:879		No text annotation
J3_9I1W_0111/1/968:969,
1/1/1045:1049,
1/1/1075:1081		No text annotation
J3_9I1W_0121/1/1213:1217,
1/1/1238:1245,
1/1/1260:1262		No text annotation
J3_9I1W_0131/1/1462:1468,
1/1/1837:1839,
1/1/1851:1854		No text annotation
J3_9I1W_0141/1/1471:1474,
1/1/1817:1823,
1/1/1832:1834		No text annotation
J3_9I1W_0151/1/1509:1514,
1/1/1571:1575,
1/1/1592:1593		No text annotation
J3_9I1W_0161/1/1521:1525,
1/1/1534:1543,
1/1/1558:1563		No text annotation
J3_9I1W_0171/1/1611:1612,
1/1/1621:1625,
1/1/1790:1791		No text annotation
J3_9I1W_0181/1/2395:2398,
1/1/2475:2480,
1/1/2549:2556		No text annotation
J3_9I1W_0191/1/2492:2495,
1/1/2508:2523,
1/1/2537:2540		No text annotation
J3_9I1W_0201/1/2610:2612,
1/1/2713:2724,
1/1/2752:2757		No text annotation
J3_9I1W_0211/1/2623:2625,
1/1/2649:2651,
1/1/2660:2665		No text annotation
J3_9I1W_0221/1/2845:2848,
1/1/2873:2875,
1/1/2889:2895		No text annotation
J3_9I1W_0231/1/3125:3130,
1/1/3157:3165,
1/1/3206:3221		No text annotation
J3_9I1W_0241/1/3239:3240,
1/1/3256:3259,
1/1/3330:3333		No text annotation
J3_9I1W_0251/3/9:14,
1/3/66:67,
1/3/110:111		No text annotation
geometric
J3_9AXU_026
J3_26985.1
J3_9I1W_0261/4/44:45,
1/4/58:64,
1/4/96:100		No text annotation
J4_9I1W_0011/1/113:114,
1/1/260:265,
1/1/286:292,
1/1/309:312		No text annotation
J4_9I1W_0021/1/180:183,
1/1/199:202,
1/1/206:208,
1/1/220:225		No text annotation
J4_9I1W_0031/1/1434:1440,
1/1/1458:1459,
1/1/1857:1860,
1/1/2315:2316		No text annotation
J4_9I1W_0041/1/1475:1479,
1/1/1503:1508,
1/1/1594:1595,
1/1/1809:1816		No text annotation
J4_9I1W_0051/1/1478:1479,
1/1/1503:1508,
1/1/1594:1595,
1/1/1809:1815		No text annotation
J4_9I1W_0061/1/1654:1655,
1/1/1673:1674,
1/1/1732:1733,
1/1/1752:1753		No text annotation
J4_9I1W_0071/1/2093:2097,
1/1/2109:2113,
1/1/2149:2153,
1/1/2280:2285		No text annotation
J4_9I1W_0081/1/2155:2157,
1/1/2211:2212,
1/1/2230:2239,
1/1/2273:2278		No text annotation
J4_9I1W_0091/1/2613:2617,
1/1/2671:2673,
1/1/2700:2701,
1/1/2710:2712		No text annotation
J4_9I1W_0101/1/2967:2970,
1/1/3000:3001,
1/1/3056:3058,
1/1/3092:3095		No text annotation
J5_9I1W_0011/1/21:23,
1/4/35:42,
1/4/102:107,
1/4/115:116,
1/4/137:139		No text annotation
J5_9I1W_0021/1/646:651,
1/1/781:784,
1/1/923:927,
1/1/1357:1359,
1/1/1414:1420		No text annotation
J5_9I1W_0031/1/663:666,
1/1/690:694,
1/1/701:709,
1/1/731:733,
1/1/764:769		No text annotation
J5_9I1W_0041/1/1886:1894,
1/1/1918:1919,
1/1/2072:2073,
1/1/2077:2085,
1/1/2294:2296		No text annotation
J5_9I1W_0051/1/2362:2369,
1/1/2774:2782,
1/1/2826:2835,
1/1/2910:2916,
1/1/2934:2939		No text annotation
J5_9I1W_0061/1/2379:2382,
1/1/2570:2573,
1/1/2586:2587,
1/1/2609:2610,
1/1/2757:2763		No text annotation
J6_9I1W_0011/1/23:28,
1/1/59:69,
1/1/76:80,
1/1/107:111,
1/1/314:324,
1/4/32:35		No text annotation
J6_9I1W_0021/1/2379:2382,
1/1/2570:2573,
1/1/2586:2587,
1/1/2609:2612,
1/1/2713:2724,
1/1/2752:2763		No text annotation
J7_9I1W_0011/1/931:936,
1/1/949:950,
1/1/1097:1100,
1/1/1124:1129,
1/1/1140:1144,
1/1/1321:1322,
1/1/1348:1353		No text annotation

Problematic loops

No problematic loops


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