HL_9I2D_056

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9I2D|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I2D_056 not in the Motif Atlas

Homologous match to HL_8GLP_059

Geometric discrepancy: 0.0486

The information below is about HL_8GLP_059

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9I2D|1|L5|C|4193
9I2D|1|L5|U|4194
9I2D|1|L5|G|4195
9I2D|1|L5|G|4196
9I2D|1|L5|G|4197
9I2D|1|L5|G|4198
9I2D|1|L5|C|4199
9I2D|1|L5|G|4200
9I2D|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain LI

Ribosomal protein uL16-like

Chain Lb

60S ribosomal protein L29