HL_9I2E_002
3D structure
- PDB id
- 9I2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human ribosome (combined translational states)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- ACUUGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I2E_002 not in the Motif Atlas
- Homologous match to HL_7VNV_002
- Geometric discrepancy: 0.148
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9I2E|1|CC|A|31
9I2E|1|CC|C|32
9I2E|1|CC|U|33
9I2E|1|CC|U|34
9I2E|1|CC|G|35
9I2E|1|CC|A|36
9I2E|1|CC|A|37
9I2E|1|CC|A|38
9I2E|1|CC|U|39
Current chains
- Chain CC
- E-site tRNA
Nearby chains
- Chain CD
- Isoform 2 of SERPINE1 mRNA-binding protein 1
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SQ
- 40S ribosomal protein S16
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