HL_9I2E_004

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

9I2E|1|CC|C|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I2E_004 not in the Motif Atlas

Homologous match to HL_4JXZ_003

Geometric discrepancy: 0.2776

The information below is about HL_4JXZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9I2E|1|CC|G|62
9I2E|1|CC|U|63
9I2E|1|CC|U|64
9I2E|1|CC|C|65
9I2E|1|CC|G|66
9I2E|1|CC|A|67
9I2E|1|CC|A|68
9I2E|1|CC|U|69
9I2E|1|CC|C|70

Current chains

Chain CC

E-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lz

60S ribosomal protein L10a