HL_9I2E_011

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9I2E|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I2E_011 not in the Motif Atlas

Homologous match to HL_9PN5_007

Geometric discrepancy: 0.326

The information below is about HL_9PN5_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9I2E|1|L5|G|230
9I2E|1|L5|U|231
9I2E|1|L5|G|232
9I2E|1|L5|U|233
9I2E|1|L5|G|234
9I2E|1|L5|A|235
9I2E|1|L5|G|236
9I2E|1|L5|G|237
9I2E|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26