HL_9I3L_003

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_003 not in the Motif Atlas

Homologous match to HL_1J1U_003

Geometric discrepancy: 0.0686

The information below is about HL_1J1U_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9I3L|1|Z|G|54
9I3L|1|Z|U|55
9I3L|1|Z|U|56
9I3L|1|Z|C|57
9I3L|1|Z|G|58
9I3L|1|Z|A|59
9I3L|1|Z|G|60
9I3L|1|Z|U|61
9I3L|1|Z|C|62

Current chains

Chain Z

Peptidyl Gly-tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5

Chain m

50S ribosomal protein L16