9I3L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9I3L_001 | 1/Z/14:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_9I3L_002 | 1/Z/32:40 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.3 | |
| HL_9I3L_003 | 1/Z/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1J1U_003 HL_33597.3 | |
| HL_9I3L_004 | 1/a/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.2 | |
| HL_9I3L_005 | 1/a/86:90 | No text annotation | ||
| HL_9I3L_006 | 1/b/59:68 | No text annotation | geometric HL_8B0X_033 HL_35677.5 | |
| HL_9I3L_007 | 1/b/87:95 | No text annotation | geometric HL_8B0X_034 HL_65821.1 | |
| HL_9I3L_008 | 1/b/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_9I3L_009 | 1/b/137:142 | UNCG | geometric HL_6QN3_001 HL_61337.4 | |
| HL_9I3L_010 | 1/b/158:168 | No text annotation | ||
| HL_9I3L_011 | 1/b/194:201 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
| HL_9I3L_012 | 1/b/225:230 | No text annotation | geometric HL_8B0X_039 HL_63151.1 | |
| HL_9I3L_013 | 1/b/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.2 | |
| HL_9I3L_014 | 1/b/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
| HL_9I3L_015 | 1/b/319:323 | No text annotation | geometric HL_9E6Q_011 HL_75660.8 | |
| HL_9I3L_016 | 1/b/327:335 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.4 | |
| HL_9I3L_017 | 1/b/382:392 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9I3L_018 | 1/b/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9I3L_019 | 1/b/462:467 | GNRA | homologous HL_7A0S_015 HL_34789.4 | |
| HL_9I3L_020 | 1/b/487:493 | GNRA | homologous HL_7A0S_016 HL_34789.4 | |
| HL_9I3L_021 | 1/b/568:577 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.3 | |
| HL_9I3L_022 | 1/b/613:619 | No text annotation | geometric HL_7Z4O_002 HL_19413.2 | |
| HL_9I3L_023 | 1/b/631:636 | GNRA | homologous HL_7A0S_020 HL_34789.4 | |
| HL_9I3L_024 | 1/b/643:649 | GNRA | geometric HL_4WF9_021 HL_34789.4 | |
| HL_9I3L_025 | 1/b/714:721 | No text annotation | geometric HL_8B0X_052 HL_98423.3 | |
| HL_9I3L_026 | 1/b/746:755 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_9I3L_027 | 1/b/781:787 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_9I3L_028 | 1/b/828:833 | No text annotation | homologous HL_7A0S_024 HL_27530.1 | |
| HL_9I3L_030 | 1/b/957:964 | GNRA | homologous HL_7A0S_026 HL_34789.4 | |
| HL_9I3L_031 | 1/b/980:987 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_9I3L_034 | 1/b/1172:1181 | No text annotation | ||
| HL_9I3L_035 | 1/b/1224:1229 | GNRA | homologous HL_7A0S_031 HL_34789.4 | |
| HL_9I3L_036 | 1/b/1283:1291 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.3 | |
| HL_9I3L_037 | 1/b/1326:1332 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_9I3L_038 | 1/b/1365:1370 | GNRA variation | homologous HL_7A0S_034 HL_34789.4 | |
| HL_9I3L_039 | 1/b/1391:1400 | No text annotation | homologous HL_7A0S_035 HL_77449.1 | |
| HL_9I3L_040 | 1/b/1453:1461 | No text annotation | geometric HL_8B0X_064 HL_00557.1 | |
| HL_9I3L_041 | 1/b/1494:1500 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9I3L_043 | 1/b/1567:1570 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_9I3L_044 | 1/b/1614:1621 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_9I3L_045 | 1/b/1632:1638 | No text annotation | geometric HL_8B0X_069 HL_34789.4 | |
| HL_9I3L_046 | 1/b/1693:1698 | UNCG | homologous HL_7A0S_042 HL_61337.4 | |
| HL_9I3L_048 | 1/b/1754:1758 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9I3L_049 | 1/b/1779:1789 | No text annotation | geometric HL_8B0X_073 HL_87681.1 | |
| HL_9I3L_050 | 1/b/1808:1813 | GNRA | homologous HL_7A0S_046 HL_93535.2 | |
| HL_9I3L_051 | 1/b/1914:1924 | No text annotation | geometric HL_8OI5_044 HL_82185.1 | |
| HL_9I3L_052 | 1/b/1953:1961 | No text annotation | homologous HL_7A0S_048 HL_61418.2 | |
| HL_9I3L_053 | 1/b/2031:2040 | No text annotation | homologous HL_7A0S_049 HL_78372.1 | |
| HL_9I3L_055 | 1/b/2213:2219 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_9I3L_056 | 1/b/2252:2260 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_9I3L_057 | 1/b/2268:2280 | No text annotation | homologous HL_7A0S_053 HL_02042.1 | |
| HL_9I3L_058 | 1/b/2308:2316 | No text annotation | geometric HL_9E6Q_072 HL_02452.1 | |
| HL_9I3L_059 | 1/b/2328:2335 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.2 | |
| HL_9I3L_060 | 1/b/2360:2365 | No text annotation | geometric HL_8B0X_084 HL_34789.4 | |
| HL_9I3L_061 | 1/b/2378:2383 | GNRA | homologous HL_7A0S_057 HL_34789.4 | |
| HL_9I3L_062 | 1/b/2408:2417 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9I3L_063 | 1/b/2475:2483 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_9I3L_064 | 1/b/2532:2539 | GNRA variation | homologous HL_7A0S_060 HL_46665.2 | |
| HL_9I3L_065 | 1/b/2555:2561 | No text annotation | homologous HL_7A0S_061 HL_48677.1 | |
| HL_9I3L_066 | 1/b/2598:2603 | GNRA | homologous HL_7A0S_062 HL_34789.4 | |
| HL_9I3L_067 | 1/b/2662:2667 | GNRA | homologous HL_7A0S_063 HL_34789.4 | |
| HL_9I3L_068 | 1/b/2705:2710 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.2 | |
| HL_9I3L_069 | 1/b/2749:2763 | No text annotation | homologous HL_7A0S_065 HL_53269.2 | |
| HL_9I3L_070 | 1/b/2799:2805 | No text annotation | geometric HL_8OI5_017 HL_44506.2 | |
| HL_9I3L_071 | 1/b/2823:2831 | No text annotation | homologous HL_7A0S_067 HL_37889.1 | |
| HL_9I3L_072 | 1/b/2860:2865 | GNRA | homologous HL_7A0S_068 HL_34789.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9I3L_029 | No text annotation | ||
| HL_9I3L_032 | No text annotation | ||
| HL_9I3L_033 | No text annotation | ||
| HL_9I3L_042 | No text annotation | ||
| HL_9I3L_047 | Mini UNCG | ||
| HL_9I3L_054 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9I3L_001 | 1/a/3:6, 1/a/113:117 | No text annotation | ||
| IL_9I3L_002 | 1/a/6:8, 1/a/112:113 | Single stack bend | geometric IL_8P9A_238 IL_15011.3 | |
| IL_9I3L_003 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_9I3L_004 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.5 | |
| IL_9I3L_005 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_9I3L_006 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9I3L_007 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_9I3L_008 | 1/b/1:3, 1/b/2903:2905 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
| IL_9I3L_009 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.1 | |
| IL_9I3L_010 | 1/b/36:37, 1/b/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_9I3L_011 | 1/b/43:44, 1/b/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
| IL_9I3L_012 | 1/b/81:85, 1/b/97:105 | No text annotation | ||
| IL_9I3L_013 | 1/b/183:184, 1/b/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.3 | |
| IL_9I3L_014 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.3 | |
| IL_9I3L_015 | 1/b/239:245, 1/b/253:258 | No text annotation | geometric IL_8B0X_071 IL_02666.1 | |
| IL_9I3L_016 | 1/b/269:271, 1/b/366:370 | No text annotation | ||
| IL_9I3L_018 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_76658.1 | |
| IL_9I3L_019 | 1/b/481:484, 1/b/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.1 | |
| IL_9I3L_020 | 1/b/536:539, 1/b/556:559 | No text annotation | geometric IL_8B0X_076 IL_58355.2 | |
| IL_9I3L_021 | 1/b/566:568, 1/b/577:579 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.3 | |
| IL_9I3L_022 | 1/b/608:612, 1/b/620:624 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9I3L_023 | 1/b/674:676, 1/b/808:810 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.4 | |
| IL_9I3L_024 | 1/b/676:680, 1/b/801:808 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.1 | |
| IL_9I3L_025 | 1/b/699:700, 1/b/765:767 | Single bulged A | homologous IL_7A0S_016 IL_14190.2 | |
| IL_9I3L_026 | 1/b/704:705, 1/b/730:732 | Single bulged G | homologous IL_7A0S_017 IL_28408.2 | |
| IL_9I3L_027 | 1/b/705:709, 1/b/726:730 | No text annotation | geometric IL_8B0X_083 IL_15190.2 | |
| IL_9I3L_028 | 1/b/740:742, 1/b/759:760 | No text annotation | geometric IL_8B0X_084 IL_48076.8 | |
| IL_9I3L_029 | 1/b/777:779, 1/b/789:793 | No text annotation | geometric IL_9E6Q_032 IL_89509.1 | |
| IL_9I3L_030 | 1/b/846:850, 1/b/932:936 | No text annotation | ||
| IL_9I3L_031 | 1/b/852:853, 1/b/928:930 | No text annotation | geometric IL_8B0X_089 IL_15011.3 | |
| IL_9I3L_032 | 1/b/858:864, 1/b/917:923 | No text annotation | geometric IL_8B0X_090 IL_94128.1 | |
| IL_9I3L_033 | 1/b/864:865, 1/b/915:917 | Minor groove platform | homologous IL_7A0S_028 IL_34520.3 | |
| IL_9I3L_034 | 1/b/866:870, 1/b/911:914 | C-loop | homologous IL_7A0S_029 IL_16301.1 | |
| IL_9I3L_035 | 1/b/872:874, 1/b/907:909 | Isolated near basepair | homologous IL_7A0S_030 IL_42997.5 | |
| IL_9I3L_036 | 1/b/877:881, 1/b/900:904 | No text annotation | geometric IL_8P9A_379 IL_21667.2 | |
| IL_9I3L_037 | 1/b/996:998, 1/b/1161:1162 | Single bulged C | homologous IL_7A0S_032 IL_05642.3 | |
| IL_9I3L_038 | 1/b/1000:1004, 1/b/1155:1159 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_9I3L_039 | 1/b/1006:1013, 1/b/1152:1153 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_11411.1 | |
| IL_9I3L_040 | 1/b/1013:1015, 1/b/1151:1152 | Single bulged U | homologous IL_7A0S_035 IL_97561.5 | |
| IL_9I3L_041 | 1/b/1020:1026, 1/b/1142:1146 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9I3L_042 | 1/b/1026:1032, 1/b/1126:1142 | No text annotation | geometric IL_8B0X_101 IL_50715.4 | |
| IL_9I3L_043 | 1/b/1033:1036, 1/b/1123:1125 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.1 | |
| IL_9I3L_044 | 1/b/1040:1043, 1/b/1116:1119 | No text annotation | geometric IL_9AXU_094 IL_15225.2 | |
| IL_9I3L_045 | 1/b/1044:1054, 1/b/1109:1115 | No text annotation | ||
| IL_9I3L_047 | 1/b/1198:1200, 1/b/1249:1252 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_9I3L_048 | 1/b/1204:1208, 1/b/1242:1245 | No text annotation | ||
| IL_9I3L_049 | 1/b/1210:1217, 1/b/1236:1240 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_9I3L_050 | 1/b/1264:1271, 1/b/2015:2021 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.3 | |
| IL_9I3L_051 | 1/b/1312:1315, 1/b/1605:1606 | No text annotation | geometric IL_9E6Q_008 IL_74641.2 | |
| IL_9I3L_052 | 1/b/1321:1325, 1/b/1333:1335 | C-loop | homologous IL_7A0S_047 IL_06671.1 | |
| IL_9I3L_053 | 1/b/1353:1357, 1/b/1378:1382 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9I3L_054 | 1/b/1359:1363, 1/b/1372:1376 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_05821.1 | |
| IL_9I3L_055 | 1/b/1417:1418, 1/b/1584:1589 | No text annotation | ||
| IL_9I3L_056 | 1/b/1419:1423, 1/b/1579:1583 | UAA/GAN | homologous IL_7A0S_051 IL_08938.1 | |
| IL_9I3L_057 | 1/b/1434:1437, 1/b/1559:1563 | No text annotation | geometric IL_8B0X_115 IL_28284.1 | |
| IL_9I3L_058 | 1/b/1439:1442, 1/b/1553:1557 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_9I3L_059 | 1/b/1452:1453, 1/b/1461:1463 | No text annotation | geometric IL_8GLP_209 IL_97561.5 | |
| IL_9I3L_060 | 1/b/1470:1473, 1/b/1522:1526 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9I3L_061 | 1/b/1476:1480, 1/b/1515:1519 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.2 | |
| IL_9I3L_062 | 1/b/1483:1484, 1/b/1509:1512 | No text annotation | ||
| IL_9I3L_063 | 1/b/1491:1493, 1/b/1501:1502 | No text annotation | geometric IL_8B0X_121 IL_14190.2 | |
| IL_9I3L_064 | 1/b/1528:1531, 1/b/1544:1548 | No text annotation | geometric IL_8B0X_122 IL_45790.2 | |
| IL_9I3L_065 | 1/b/1653:1658, 1/b/2008:2010 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_9I3L_066 | 1/b/1665:1667, 1/b/1999:2001 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_9I3L_067 | 1/b/1668:1671, 1/b/1997:1998 | No text annotation | geometric IL_8B0X_125 IL_74641.2 | |
| IL_9I3L_068 | 1/b/1668:1676, 1/b/1994:1998 | No text annotation | geometric IL_8B0X_180 IL_80252.1 | |
| IL_9I3L_069 | 1/b/1671:1676, 1/b/1994:1997 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.1 | |
| IL_9I3L_070 | 1/b/1688:1693, 1/b/1698:1704 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.1 | |
| IL_9I3L_071 | 1/b/1714:1720, 1/b/1744:1748 | No text annotation | geometric IL_8B0X_128 IL_82100.1 | |
| IL_9I3L_072 | 1/b/1722:1726, 1/b/1738:1742 | No text annotation | geometric IL_8B0X_129 IL_70744.1 | |
| IL_9I3L_073 | 1/b/1729:1730, 1/b/1733:1735 | No text annotation | ||
| IL_9I3L_074 | 1/b/1772:1773, 1/b/1984:1986 | Single bulged A | homologous IL_7A0S_064 IL_14190.2 | |
| IL_9I3L_075 | 1/b/1800:1806, 1/b/1815:1823 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9I3L_076 | 1/b/1839:1842, 1/b/1906:1907 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.1 | |
| IL_9I3L_077 | 1/b/1843:1844, 1/b/1902:1905 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.1 | |
| IL_9I3L_078 | 1/b/1848:1851, 1/b/1897:1898 | No text annotation | geometric IL_8B0X_135 IL_73108.2 | |
| IL_9I3L_079 | 1/b/1853:1862, 1/b/1886:1895 | No text annotation | ||
| IL_9I3L_080 | 1/b/1866:1869, 1/b/1878:1882 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9I3L_081 | 1/b/1937:1938, 1/b/1968:1971 | No text annotation | geometric IL_8B0X_137 IL_24886.2 | |
| IL_9I3L_082 | 1/b/1938:1949, 1/b/1965:1968 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9I3L_083 | 1/b/2054:2056, 1/b/2621:2622 | Major groove platform | homologous IL_7A0S_073 IL_48076.8 | |
| IL_9I3L_084 | 1/b/2058:2060, 1/b/2616:2619 | No text annotation | geometric IL_9E6Q_076 IL_80025.1 | |
| IL_9I3L_085 | 1/b/2071:2073, 1/b/2446:2447 | Single bulged U | homologous IL_7A0S_075 IL_97561.5 | |
| IL_9I3L_086 | 1/b/2074:2075, 1/b/2442:2445 | Minor groove platform | homologous IL_7A0S_076 IL_34520.3 | |
| IL_9I3L_087 | 1/b/2085:2087, 1/b/2240:2243 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.2 | |
| IL_9I3L_088 | 1/b/2089:2091, 1/b/2236:2238 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.3 | |
| IL_9I3L_092 | 1/b/2206:2208, 1/b/2224:2225 | No text annotation | geometric IL_8B0X_146 IL_97561.5 | |
| IL_9I3L_093 | 1/b/2301:2303, 1/b/2321:2325 | No text annotation | geometric IL_8B0X_147 IL_14250.1 | |
| IL_9I3L_094 | 1/b/2354:2357, 1/b/2368:2371 | Double sheared | homologous IL_7A0S_081 IL_58355.2 | |
| IL_9I3L_095 | 1/b/2405:2407, 1/b/2418:2419 | Major groove intercalation | geometric IL_3MXH_003 IL_97561.5 | |
| IL_9I3L_096 | 1/b/2458:2459, 1/b/2500:2502 | Major groove platform | homologous IL_7A0S_084 IL_48076.8 | |
| IL_9I3L_097 | 1/b/2461:2463, 1/b/2497:2498 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_9I3L_098 | 1/b/2463:2465, 1/b/2493:2497 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.2 | |
| IL_9I3L_099 | 1/b/2470:2474, 1/b/2484:2488 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_9I3L_100 | 1/b/2511:2512, 1/b/2584:2586 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_9I3L_101 | 1/b/2514:2516, 1/b/2578:2582 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.4 | |
| IL_9I3L_102 | 1/b/2516:2517, 1/b/2575:2578 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.2 | |
| IL_9I3L_103 | 1/b/2526:2527, 1/b/2544:2547 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_9I3L_104 | 1/b/2595:2596, 1/b/2605:2607 | No text annotation | geometric IL_8B0X_159 IL_14190.2 | |
| IL_9I3L_105 | 1/b/2640:2644, 1/b/2778:2786 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9I3L_106 | 1/b/2656:2662, 1/b/2667:2672 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9I3L_107 | 1/b/2684:2688, 1/b/2729:2731 | C-loop | homologous IL_7A0S_095 IL_63596.12 | |
| IL_9I3L_108 | 1/b/2691:2695, 1/b/2722:2726 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9I3L_109 | 1/b/2699:2700, 1/b/2715:2718 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.2 | |
| IL_9I3L_110 | 1/b/2741:2746, 1/b/2766:2771 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9I3L_111 | 1/b/2810:2815, 1/b/2893:2896 | No text annotation | ||
| IL_9I3L_112 | 1/b/2842:2843, 1/b/2882:2884 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.2 | |
| IL_9I3L_113 | 1/b/2847:2850, 1/b/2874:2878 | No text annotation | geometric IL_8B0X_169 IL_60988.2 | |
| IL_9I3L_114 | 1/b/2851:2856, 1/b/2869:2873 | No text annotation | homologous IL_7A0S_101 IL_48489.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9I3L_017 | No text annotation | ||
| IL_9I3L_046 | No text annotation | ||
| IL_9I3L_089 | No text annotation | ||
| IL_9I3L_090 | No text annotation | ||
| IL_9I3L_091 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9I3L_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | ||
| J3_9I3L_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.1 | |
| J3_9I3L_003 | 1/b/30:31, 1/b/474:484, 1/b/496:510 | No text annotation | homologous J3_7A0S_015 J3_17917.1 | |
| J3_9I3L_004 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | homologous J3_7A0S_016 J3_07616.1 | |
| J3_9I3L_005 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation | homologous J3_7A0S_002 J3_01004.1 | |
| J3_9I3L_006 | 1/b/297:301, 1/b/316:325, 1/b/337:341 | No text annotation | geometric J3_8B0X_034 J3_77124.1 | |
| J3_9I3L_007 | 1/b/685:691, 1/b/775:777, 1/b/793:796 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_9I3L_008 | 1/b/700:702, 1/b/734:738, 1/b/762:765 | No text annotation | homologous J3_7A0S_005 J3_69816.1 | |
| J3_9I3L_009 | 1/b/1054:1061, 1/b/1081:1092, 1/b/1103:1109 | No text annotation | ||
| J3_9I3L_010 | 1/b/1300:1305, 1/b/1627:1629, 1/b/1641:1644 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9I3L_011 | 1/b/1308:1311, 1/b/1607:1613, 1/b/1622:1624 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9I3L_012 | 1/b/1346:1352, 1/b/1383:1387, 1/b/1404:1405 | No text annotation | ||
| J3_9I3L_013 | 1/b/1426:1431, 1/b/1566:1567, 1/b/1570:1576 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9I3L_014 | 1/b/2095:2097, 1/b/2200:2204, 1/b/2227:2232 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_9I3L_015 | 1/b/2286:2288, 1/b/2388:2399, 1/b/2425:2431 | No text annotation | homologous J3_7A0S_020 J3_04772.1 | |
| J3_9I3L_016 | 1/b/2299:2301, 1/b/2325:2327, 1/b/2336:2341 | No text annotation | geometric J3_8B0X_022 J3_05327.1 | |
| J3_9I3L_017 | 1/b/2299:2303, 1/b/2321:2327, 1/b/2336:2341 | No text annotation | ||
| J3_9I3L_018 | 1/b/2521:2524, 1/b/2549:2554, 1/b/2562:2571 | No text annotation | ||
| J3_9I3L_019 | 1/b/2793:2795, 1/b/2809:2810, 1/b/2896:2898 | No text annotation | ||
| J3_9I3L_020 | 1/b/2816:2819, 1/b/2835:2840, 1/b/2886:2892 | No text annotation | ||
| J4_9I3L_001 | 1/Z/8:11, 1/Z/26:28, 1/Z/44:50, 1/Z/66:67 | tRNA junction | homologous J4_7MRL_001 J4_95067.1 | |
| J4_9I3L_002 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | homologous J4_7A0S_001 J4_94698.1 | |
| J4_9I3L_003 | 1/b/297:301, 1/b/316:319, 1/b/323:325, 1/b/337:341 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9I3L_004 | 1/b/603:606, 1/b/626:630, 1/b/637:640, 1/b/652:658 | No text annotation | ||
| J4_9I3L_005 | 1/b/1272:1278, 1/b/1296:1297, 1/b/1647:1650, 1/b/2013:2014 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_9I3L_006 | 1/b/1312:1316, 1/b/1340:1345, 1/b/1406:1407, 1/b/1599:1606 | No text annotation | ||
| J4_9I3L_007 | 1/b/1315:1316, 1/b/1340:1345, 1/b/1406:1407, 1/b/1599:1605 | No text annotation | homologous J4_7A0S_006 J4_48150.1 | |
| J4_9I3L_008 | 1/b/1446:1447, 1/b/1468:1469, 1/b/1527:1528, 1/b/1548:1549 | No text annotation | ||
| J4_9I3L_009 | 1/b/1774:1778, 1/b/1790:1794, 1/b/1829:1832, 1/b/1979:1983 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9I3L_010 | 1/b/1835:1837, 1/b/1909:1910, 1/b/1928:1937, 1/b/1971:1976 | No text annotation | ||
| J4_9I3L_011 | 1/b/2289:2293, 1/b/2347:2351, 1/b/2374:2376, 1/b/2385:2387 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9I3L_012 | 1/b/2647:2650, 1/b/2678:2680, 1/b/2735:2739, 1/b/2773:2775 | No text annotation | ||
| J5_9I3L_001 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | ||
| J5_9I3L_002 | 1/b/531:533, 1/b/562:566, 1/b/579:581, 1/b/1263:1264, 1/b/2021:2022 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9I3L_003 | 1/b/586:591, 1/b/670:673, 1/b/811:814, 1/b/1197:1198, 1/b/1252:1258 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_9I3L_004 | 1/b/1676:1684, 1/b/1708:1709, 1/b/1753:1754, 1/b/1758:1766, 1/b/1992:1994 | No text annotation | homologous J5_7A0S_005 J5_99177.1 | |
| J5_9I3L_005 | 1/b/2061:2068, 1/b/2450:2458, 1/b/2502:2511, 1/b/2586:2592, 1/b/2610:2615 | No text annotation | ||
| J5_9I3L_006 | 1/b/2061:2068, 1/b/2450:2459, 1/b/2500:2511, 1/b/2586:2592, 1/b/2610:2615 | No text annotation | ||
| J5_9I3L_007 | 1/b/2078:2081, 1/b/2247:2250, 1/b/2262:2263, 1/b/2285:2286, 1/b/2431:2439 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9I3L_001 | 1/b/45:46, 1/b/179:183, 1/b/214:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_9I3L_002 | 1/b/2078:2081, 1/b/2247:2250, 1/b/2262:2263, 1/b/2285:2288, 1/b/2388:2399, 1/b/2425:2439 | No text annotation | ||
| J7_9I3L_001 | 1/b/8:15, 1/b/525:531, 1/b/2022:2027, 1/b/2044:2047, 1/b/2629:2634, 1/b/2792:2793, 1/b/2898:2899 | No text annotation | ||
| J7_9I3L_002 | 1/b/819:824, 1/b/837:840, 1/b/942:948, 1/b/973:978, 1/b/989:993, 1/b/1165:1166, 1/b/1187:1192 | No text annotation |
Problematic loops
No problematic loops
Coloring options: