HL_9I3L_039

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9I3L|1|b|U|1398, 9I3L|1|b|U|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_039 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3377

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9I3L|1|b|G|1391
9I3L|1|b|U|1392
9I3L|1|b|U|1393
9I3L|1|b|A|1394
9I3L|1|b|A|1395
9I3L|1|b|U|1396
9I3L|1|b|A|1397
9I3L|1|b|U|1398
9I3L|1|b|U|1399
9I3L|1|b|C|1400

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23