HL_9I3L_044

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9I3L|1|b|A|1616, 9I3L|1|b|A|1618, 9I3L|1|b|A|1620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_044 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1149

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9I3L|1|b|C|1614
9I3L|1|b|G|1615
9I3L|1|b|A|1616
9I3L|1|b|C|1617
9I3L|1|b|A|1618
9I3L|1|b|C|1619
9I3L|1|b|A|1620
9I3L|1|b|G|1621

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL22

Chain z

Gelation factor