HL_9I5T_006

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_006 not in the Motif Atlas

Geometric match to HL_8B0X_040

Geometric discrepancy: 0.1005

The information below is about HL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9I5T|1|A|U|224
9I5T|1|A|G|225
9I5T|1|A|G|226
9I5T|1|A|C|227
9I5T|1|A|G|228
9I5T|1|A|A|229
9I5T|1|A|G|230

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain 7

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15