Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9I5T_0011/A/48:57No text annotation
geometric
HL_9DFE_001
HL_17803.2
HL_9I5T_0021/A/76:84Pseudoknot geometry
geometric
HL_4WF9_002
HL_00911.3
HL_9I5T_0031/A/111:116No text annotation
geometric
HL_8B0X_035
HL_82710.3
HL_9I5T_0041/A/172:179No text annotation
geometric
HL_8B0X_038
HL_48677.2
HL_9I5T_0051/A/203:208No text annotation
geometric
HL_9E6Q_007
NA
HL_9I5T_0061/A/224:230No text annotation
geometric
HL_8B0X_040
HL_76371.3
HL_9I5T_0071/A/323:330No text annotation
geometric
HL_8B0X_041
HL_13999.4
HL_9I5T_0081/A/337:341No text annotation
geometric
HL_9E6Q_011
HL_75660.9
HL_9I5T_0091/A/345:353No text annotation
geometric
HL_9E6Q_012
HL_27670.5
HL_9I5T_0101/A/433:440No text annotation
geometric
HL_8B0X_045
HL_30680.5
HL_9I5T_0111/A/485:490No text annotation
geometric
HL_8B0X_046
HL_34789.5
HL_9I5T_0121/A/588:597T-loop with 2 stacked bulged bases
geometric
HL_8B0X_048
HL_33597.4
HL_9I5T_0131/A/660:665No text annotation
geometric
HL_8B0X_085
HL_34789.5
HL_9I5T_0141/A/672:678Pseudoknot geometry
geometric
HL_5VPO_138
HL_46333.1
HL_9I5T_0151/A/779:788No text annotation
geometric
HL_4WF9_023
HL_50204.2
HL_9I5T_0161/A/814:820No text annotation
geometric
HL_8B0X_054
HL_79773.1
HL_9I5T_0171/A/861:866No text annotation
geometric
HL_8B0X_055
HL_27530.2
HL_9I5T_0181/A/988:995GNRA
geometric
HL_4WF9_027
HL_34789.5
HL_9I5T_0191/A/1011:1018No text annotation
geometric
HL_9E6Q_028
HL_47171.2
HL_9I5T_0201/A/1250:1256No text annotation
HL_9I5T_0211/A/1310:1318T-loop with 2 stacked bulged bases
geometric
HL_8GLP_033
HL_33597.4
HL_9I5T_0221/A/1353:1359No text annotation
geometric
HL_8B0X_061
HL_49081.1
HL_9I5T_0231/A/1392:1397GNRA variation
geometric
HL_7A0S_034
HL_34789.5
HL_9I5T_0241/A/1419:1428No text annotation
geometric
HL_9DFE_034
HL_77449.2
HL_9I5T_0251/A/1602:1605No text annotation
geometric
HL_8B0X_067
HL_90436.4
HL_9I5T_0261/A/1648:1655No text annotation
geometric
HL_8B0X_068
HL_28592.3
HL_9I5T_0271/A/1665:1673GNRA with extra cWW
geometric
HL_4WF9_039
HL_87268.3
HL_9I5T_0281/A/1727:1732No text annotation
geometric
HL_8B0X_008
HL_61337.5
HL_9I5T_0291/A/1761:1765No text annotation
geometric
HL_8B0X_072
HL_80709.5
HL_9I5T_0301/A/1786:1796No text annotation
geometric
HL_8B0X_073
HL_87681.2
HL_9I5T_0311/A/1815:1820GNRA
geometric
HL_2R8S_001
HL_34789.5
HL_9I5T_0321/A/1959:1967No text annotation
geometric
HL_8B0X_077
HL_33350.1
HL_9I5T_0331/A/2037:2046No text annotation
geometric
HL_8B0X_078
HL_78372.2
HL_9I5T_0341/A/2249:2257LSU P loop
geometric
HL_8B0X_080
HL_11974.3
HL_9I5T_0351/A/2265:2277No text annotation
geometric
HL_8B0X_081
HL_02042.2
HL_9I5T_0361/A/2325:2332Pseudoknot geometry
geometric
HL_4WF9_052
HL_52651.3
HL_9I5T_0371/A/2356:2363GNRA with extra cWW
geometric
HL_4WF9_053
HL_87268.3
HL_9I5T_0381/A/2375:2380No text annotation
geometric
HL_8GLP_070
HL_34789.5
HL_9I5T_0391/A/2405:2414No text annotation
geometric
HL_9DFE_057
HL_51853.2
HL_9I5T_0401/A/2529:2536No text annotation
geometric
HL_8B0X_088
HL_46665.3
HL_9I5T_0411/A/2552:2558LSU A loop
geometric
HL_7A0S_061
HL_48677.2
HL_9I5T_0421/A/2595:2600No text annotation
geometric
HL_9E6Q_015
HL_34789.5
HL_9I5T_0431/A/2659:2664GNRA
geometric
HL_6CB3_004
HL_34789.5
HL_9I5T_0441/A/2702:2707No text annotation
geometric
HL_8GLP_071
HL_12125.3
HL_9I5T_0451/A/2746:2760No text annotation
geometric
HL_8B0X_093
HL_53269.3
HL_9I5T_0461/A/2805:2813No text annotation
geometric
HL_9DFE_065
HL_37889.2
HL_9I5T_0471/A/2842:2847GNRA
geometric
HL_4LFB_028
HL_34789.5
HL_9I5T_0481/B/3:24No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9I5T_0011/A/13:19,
1/A/533:539
No text annotation
geometric
IL_8B0X_065
IL_22311.2
IL_9I5T_0021/A/25:26,
1/A/465:467
No text annotation
geometric
IL_8B0X_066
IL_14190.3
IL_9I5T_0031/A/32:33,
1/A/457:459
No text annotation
geometric
IL_8B0X_067
IL_34520.4
IL_9I5T_0041/A/70:74,
1/A/86:93
Kink-turn
geometric
IL_4WF9_004
IL_71972.2
IL_9I5T_0051/A/161:162,
1/A/190:192
Single stack bend
geometric
IL_4V9F_005
IL_15011.4
IL_9I5T_0061/A/166:172,
1/A/179:186
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_006
IL_62167.4
IL_9I5T_0071/A/217:223,
1/A/231:236
7x6 Sarcin-Ricin; G-bulge
geometric
IL_8B0X_071
IL_02666.2
IL_9I5T_0081/A/283:285,
1/A/387:390
No text annotation
geometric
IL_8OI5_093
IL_75527.3
IL_9I5T_0091/A/310:313,
1/A/361:366
No text annotation
IL_9I5T_0101/A/319:321,
1/A/332:334
Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.5
IL_9I5T_0111/A/504:507,
1/A/519:532
No text annotation
geometric
IL_8B0X_075
IL_44923.2
IL_9I5T_0121/A/559:563,
1/A/575:579
No text annotation
geometric
IL_8GLP_204
IL_87767.3
IL_9I5T_0131/A/586:588,
1/A/597:599
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.4
IL_9I5T_0141/A/628:632,
1/A/649:653
No text annotation
geometric
IL_9DFE_014
IL_66798.3
IL_9I5T_0151/A/707:709,
1/A/841:843
No text annotation
geometric
IL_8B0X_079
IL_01003.5
IL_9I5T_0161/A/709:713,
1/A/834:841
No text annotation
geometric
IL_8B0X_080
IL_73855.2
IL_9I5T_0171/A/732:733,
1/A/798:800
No text annotation
geometric
IL_8B0X_081
IL_14190.3
IL_9I5T_0181/A/737:738,
1/A/763:765
No text annotation
geometric
IL_9E6Q_028
IL_28408.3
IL_9I5T_0191/A/738:742,
1/A/759:763
No text annotation
geometric
IL_8B0X_083
IL_15190.3
IL_9I5T_0201/A/773:776,
1/A/791:793
No text annotation
geometric
IL_9DFE_020
IL_36931.3
IL_9I5T_0211/A/810:812,
1/A/822:826
No text annotation
geometric
IL_8P9A_261
IL_89509.2
IL_9I5T_0221/A/872:873,
1/A/973:975
Single stack bend
geometric
IL_7A0S_022
IL_15011.4
IL_9I5T_0231/A/879:881,
1/A/966:967
90 degree turn
geometric
IL_7A0S_024
IL_79144.1
IL_9I5T_0241/A/881:882,
1/A/963:966
No text annotation
IL_9I5T_0251/A/890:896,
1/A/949:955
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_8B0X_090
IL_94128.2
IL_9I5T_0261/A/896:897,
1/A/947:949
Minor groove platform
geometric
IL_4V9F_034
IL_34520.4
IL_9I5T_0271/A/898:903,
1/A/943:946
C-loop
geometric
IL_4WF9_033
IL_16301.2
IL_9I5T_0281/A/904:907,
1/A/939:942
No text annotation
IL_9I5T_0291/A/1027:1029,
1/A/1194:1195
No text annotation
geometric
IL_8B0X_096
IL_05642.4
IL_9I5T_0301/A/1031:1035,
1/A/1188:1192
No text annotation
geometric
IL_8B0X_097
IL_08938.2
IL_9I5T_0311/A/1037:1044,
1/A/1185:1186
No text annotation
geometric
IL_8B0X_098
IL_46868.1
IL_9I5T_0321/A/1044:1046,
1/A/1184:1185
No text annotation
geometric
IL_8B0X_099
IL_97561.6
IL_9I5T_0331/A/1051:1057,
1/A/1175:1179
Kink-turn related
geometric
IL_9E6Q_045
IL_57188.6
IL_9I5T_0341/A/1066:1069,
1/A/1157:1159
No text annotation
geometric
IL_9AXU_061
IL_75527.3
IL_9I5T_0351/A/1225:1227,
1/A/1276:1279
No text annotation
geometric
IL_9E6Q_049
IL_42997.6
IL_9I5T_0361/A/1232:1234,
1/A/1269:1271
Isolated non-canonical cWW pair
geometric
IL_8P9A_459
IL_71625.4
IL_9I5T_0371/A/1236:1243,
1/A/1263:1267
Kink-turn
geometric
IL_4V9F_048
IL_90775.2
IL_9I5T_0381/A/1291:1298,
1/A/2021:2027
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_048
IL_62167.4
IL_9I5T_0391/A/1339:1342,
1/A/1639:1640
Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_74641.3
IL_9I5T_0401/A/1348:1352,
1/A/1360:1362
No text annotation
geometric
IL_8B0X_110
IL_63596.13
IL_9I5T_0411/A/1380:1384,
1/A/1405:1409
No text annotation
geometric
IL_8B0X_111
IL_89021.4
IL_9I5T_0421/A/1386:1390,
1/A/1399:1403
No text annotation
geometric
IL_8OI5_120
IL_08938.2
IL_9I5T_0431/A/1436:1438,
1/A/1630:1632
No text annotation
geometric
IL_8GLP_213
IL_10892.3
IL_9I5T_0441/A/1447:1451,
1/A/1614:1618
UAA/GAN
geometric
IL_7A0S_051
IL_08938.2
IL_9I5T_0451/A/1462:1465,
1/A/1594:1598
No text annotation
geometric
IL_8B0X_115
IL_28284.1
IL_9I5T_0461/A/1687:1692,
1/A/2014:2016
No text annotation
geometric
IL_8B0X_123
IL_12566.5
IL_9I5T_0471/A/1699:1701,
1/A/2005:2007
No text annotation
geometric
IL_8B0X_124
IL_10432.2
IL_9I5T_0481/A/1702:1705,
1/A/2003:2004
No text annotation
geometric
IL_9E6Q_063
IL_74641.3
IL_9I5T_0491/A/1702:1710,
1/A/2000:2004
No text annotation
geometric
IL_8B0X_180
IL_80252.2
IL_9I5T_0501/A/1705:1710,
1/A/2000:2003
No text annotation
geometric
IL_8B0X_126
IL_28217.2
IL_9I5T_0511/A/1722:1727,
1/A/1732:1738
No text annotation
geometric
IL_8GLP_108
IL_20700.2
IL_9I5T_0521/A/1779:1780,
1/A/1990:1992
No text annotation
geometric
IL_8B0X_131
IL_14190.3
IL_9I5T_0531/A/1807:1813,
1/A/1822:1830
No text annotation
IL_9I5T_0541/A/1846:1849,
1/A/1912:1913
No text annotation
geometric
IL_8B0X_133
IL_55206.2
IL_9I5T_0551/A/1850:1851,
1/A/1908:1911
No text annotation
geometric
IL_8B0X_134
IL_71421.4
IL_9I5T_0561/A/1855:1858,
1/A/1903:1904
No text annotation
geometric
IL_9E6Q_071
IL_87975.1
IL_9I5T_0571/A/1859:1864,
1/A/1897:1902
No text annotation
geometric
IL_9E6Q_072
IL_74322.2
IL_9I5T_0581/A/1865:1869,
1/A/1892:1896
Triple sheared
geometric
IL_9DFE_075
IL_15190.3
IL_9I5T_0591/A/1873:1876,
1/A/1884:1888
No text annotation
geometric
IL_8B0X_136
IL_77691.7
IL_9I5T_0601/A/1943:1944,
1/A/1974:1977
No text annotation
geometric
IL_8B0X_137
IL_24886.3
IL_9I5T_0611/A/1944:1955,
1/A/1971:1974
No text annotation
IL_9I5T_0621/A/2060:2062,
1/A/2618:2619
Major groove platform
geometric
IL_7A0S_073
IL_48076.9
IL_9I5T_0631/A/2064:2066,
1/A/2613:2616
No text annotation
geometric
IL_4V9F_073
IL_80025.2
IL_9I5T_0641/A/2077:2079,
1/A/2443:2444
Single bulged U
geometric
IL_4WF9_080
IL_97561.6
IL_9I5T_0651/A/2080:2081,
1/A/2439:2442
Minor groove platform
geometric
IL_8P9A_322
IL_34520.4
IL_9I5T_0661/A/2091:2093,
1/A/2237:2240
No text annotation
geometric
IL_8B0X_144
IL_87316.3
IL_9I5T_0671/A/2095:2097,
1/A/2233:2235
No text annotation
geometric
IL_8B0X_145
IL_71625.4
IL_9I5T_0681/A/2292:2294,
1/A/2340:2342
No text annotation
geometric
IL_9AXU_019
IL_10892.3
IL_9I5T_0691/A/2298:2300,
1/A/2318:2322
No text annotation
geometric
IL_8P9A_326
IL_14250.2
IL_9I5T_0701/A/2350:2354,
1/A/2365:2369
No text annotation
IL_9I5T_0711/A/2454:2455,
1/A/2499:2501
Single stack bend
geometric
IL_4WF9_089
IL_15011.4
IL_9I5T_0721/A/2455:2456,
1/A/2497:2499
No text annotation
geometric
IL_8B0X_184
IL_48076.9
IL_9I5T_0731/A/2458:2460,
1/A/2494:2495
Major groove platform
geometric
IL_9DFE_093
IL_48076.9
IL_9I5T_0741/A/2460:2462,
1/A/2490:2494
No text annotation
geometric
IL_9DFE_094
IL_36931.3
IL_9I5T_0751/A/2467:2471,
1/A/2481:2485
No text annotation
geometric
IL_8B0X_153
IL_87767.3
IL_9I5T_0761/A/2508:2509,
1/A/2581:2583
Major groove platform
geometric
IL_4V9F_086
IL_46637.3
IL_9I5T_0771/A/2511:2513,
1/A/2575:2579
Isolated non-canonical cWW with bulges
geometric
IL_9DFE_097
IL_68118.5
IL_9I5T_0781/A/2513:2514,
1/A/2572:2575
No text annotation
geometric
IL_4WF9_096
IL_44609.3
IL_9I5T_0791/A/2523:2524,
1/A/2541:2544
No text annotation
geometric
IL_8B0X_157
IL_94991.2
IL_9I5T_0801/A/2592:2593,
1/A/2602:2604
No text annotation
geometric
IL_9AXU_106
IL_14190.3
IL_9I5T_0811/A/2637:2641,
1/A/2775:2783
tSH-tHS-tHW
geometric
IL_4WF9_099
IL_04638.4
IL_9I5T_0821/A/2653:2659,
1/A/2664:2669
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_8B0X_161
IL_16458.6
IL_9I5T_0831/A/2681:2685,
1/A/2726:2728
C-loop
geometric
IL_4WF9_101
IL_63596.13
IL_9I5T_0841/A/2687:2692,
1/A/2719:2724
No text annotation
geometric
IL_9AXU_113
IL_74322.2
IL_9I5T_0851/A/2696:2697,
1/A/2712:2715
No text annotation
geometric
IL_9E6Q_098
IL_44609.3
IL_9I5T_0861/A/2738:2743,
1/A/2763:2768
UAA/GAN with extra cWW
geometric
IL_7A0S_098
IL_91079.1
IL_9I5T_0871/A/2824:2825,
1/A/2863:2865
No text annotation
geometric
IL_8B0X_168
IL_77710.2
IL_9I5T_0881/A/2829:2831,
1/A/2856:2859
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.3
IL_9I5T_0891/A/2833:2838,
1/A/2851:2854
tHS double platform
geometric
IL_4V9F_099
IL_48489.2
IL_9I5T_0901/B/28:29,
1/B/49:52
No text annotation
geometric
IL_9E6Q_107
IL_73108.3
IL_9I5T_0911/B/32:36,
1/B/42:46
Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.13
IL_9I5T_0921/B/69:77,
1/B/90:98
No text annotation
geometric
IL_8B0X_175
IL_71138.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9I5T_0011/A/19:20,
1/A/497:504,
1/A/532:533
No text annotation
geometric
J3_8B0X_014
J3_68715.2
J3_9I5T_0021/A/19:20,
1/A/497:507,
1/A/519:533
No text annotation
geometric
J3_8B0X_032
J3_17917.2
J3_9I5T_0031/A/21:24,
1/A/468:484,
1/A/491:496
No text annotation
geometric
J3_4WF9_012
J3_07616.2
J3_9I5T_0041/A/45:46,
1/A/59:65,
1/A/98:102
No text annotation
geometric
J3_8B0X_015
J3_01004.2
J3_9I5T_0051/A/247:251,
1/A/274:281,
1/A/392:393
No text annotation
geometric
J3_9DFE_005
J3_97971.2
J3_9I5T_0061/A/718:724,
1/A/808:810,
1/A/826:829
No text annotation
geometric
J3_8B0X_016
J3_46658.2
J3_9I5T_0071/A/733:735,
1/A/767:771,
1/A/795:798
No text annotation
geometric
J3_9E6Q_008
J3_69816.2
J3_9I5T_0081/A/1327:1332,
1/A/1661:1663,
1/A/1675:1678
No text annotation
geometric
J3_7A0S_006
J3_32852.7
J3_9I5T_0091/A/1335:1338,
1/A/1641:1647,
1/A/1656:1658
No text annotation
geometric
J3_9AXU_014
J3_76012.2
J3_9I5T_0101/A/1373:1379,
1/A/1410:1415,
1/A/1432:1433
No text annotation
J3_9I5T_0111/A/1454:1459,
1/A/1601:1602,
1/A/1605:1611
No text annotation
geometric
J3_8B0X_035
J3_34864.3
J3_9I5T_0121/A/2101:2103,
1/A/2206:2210,
1/A/2224:2229
No text annotation
geometric
J3_8B0X_021
J3_17460.1
J3_9I5T_0131/A/2283:2285,
1/A/2385:2396,
1/A/2422:2428
No text annotation
geometric
J3_8B0X_036
J3_04772.2
J3_9I5T_0141/A/2296:2298,
1/A/2322:2324,
1/A/2333:2338
No text annotation
geometric
J3_8B0X_022
J3_05327.2
J3_9I5T_0151/A/2518:2521,
1/A/2546:2548,
1/A/2562:2568
No text annotation
geometric
J3_4WF9_009
J3_32601.6
J3_9I5T_0161/A/2800:2801,
1/A/2817:2822,
1/A/2867:2871
No text annotation
J4_9I5T_0011/A/246:247,
1/A/393:398,
1/A/422:429,
1/A/444:447
No text annotation
J4_9I5T_0021/A/315:319,
1/A/334:337,
1/A/341:343,
1/A/355:359
No text annotation
J4_9I5T_0031/A/1299:1305,
1/A/1323:1324,
1/A/1681:1684,
1/A/2019:2020
No text annotation
J4_9I5T_0041/A/1339:1343,
1/A/1367:1372,
1/A/1434:1435,
1/A/1633:1640
No text annotation
J4_9I5T_0051/A/1342:1343,
1/A/1367:1372,
1/A/1434:1435,
1/A/1633:1639
No text annotation
J4_9I5T_0061/A/1781:1785,
1/A/1797:1801,
1/A/1836:1839,
1/A/1985:1989
No text annotation
J4_9I5T_0071/A/2286:2290,
1/A/2344:2348,
1/A/2371:2373,
1/A/2382:2384
No text annotation
J5_9I5T_0011/A/246:251,
1/A/274:281,
1/A/392:398,
1/A/422:429,
1/A/444:447
No text annotation
J5_9I5T_0021/A/554:556,
1/A/582:586,
1/A/599:601,
1/A/1290:1291,
1/A/2027:2028
No text annotation
J5_9I5T_0031/A/606:611,
1/A/703:706,
1/A/844:847,
1/A/1224:1225,
1/A/1279:1285
No text annotation
J5_9I5T_0041/A/1710:1718,
1/A/1742:1743,
1/A/1760:1761,
1/A/1765:1773,
1/A/1998:2000
No text annotation
J5_9I5T_0051/A/2067:2074,
1/A/2447:2454,
1/A/2501:2508,
1/A/2583:2589,
1/A/2607:2612
No text annotation
J5_9I5T_0061/A/2084:2087,
1/A/2244:2247,
1/A/2259:2260,
1/A/2282:2283,
1/A/2428:2436
No text annotation
J6_9I5T_0011/A/34:35,
1/A/157:161,
1/A/192:202,
1/A/209:213,
1/A/240:244,
1/A/449:456
No text annotation
J6_9I5T_0021/A/2084:2087,
1/A/2244:2247,
1/A/2259:2260,
1/A/2282:2285,
1/A/2385:2396,
1/A/2422:2436
No text annotation
J7_9I5T_0011/A/852:857,
1/A/870:871,
1/A/976:979,
1/A/1004:1009,
1/A/1020:1024,
1/A/1198:1199,
1/A/1214:1219
No text annotation

Problematic loops

No problematic loops


Coloring options:
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