HL_9I5T_007

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9I5T|1|A|A|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_007 not in the Motif Atlas

Geometric match to HL_8B0X_041

Geometric discrepancy: 0.0612

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9I5T|1|A|C|323
9I5T|1|A|U|324
9I5T|1|A|G|325
9I5T|1|A|G|326
9I5T|1|A|A|327
9I5T|1|A|A|328
9I5T|1|A|A|329
9I5T|1|A|G|330

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL22

Chain X

Large ribosomal subunit protein uL24