HL_9I5T_016

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9I5T|1|A|A|816, 9I5T|1|A|G|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_016 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.0642

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9I5T|1|A|U|814
9I5T|1|A|G|815
9I5T|1|A|A|816
9I5T|1|A|A|817
9I5T|1|A|A|818
9I5T|1|A|G|819
9I5T|1|A|G|820

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2