HL_9I5T_019

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAAGAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_019 not in the Motif Atlas

Geometric match to HL_9E6Q_028

Geometric discrepancy: 0.2855

The information below is about HL_9E6Q_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9I5T|1|A|A|1011
9I5T|1|A|G|1012
9I5T|1|A|A|1013
9I5T|1|A|A|1014
9I5T|1|A|G|1015
9I5T|1|A|A|1016
9I5T|1|A|A|1017
9I5T|1|A|U|1018

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain T

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein bL21