HL_9I5T_021

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_021 not in the Motif Atlas

Geometric match to HL_8GLP_033

Geometric discrepancy: 0.1022

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9I5T|1|A|G|1310
9I5T|1|A|C|1311
9I5T|1|A|G|1312
9I5T|1|A|A|1313
9I5T|1|A|G|1314
9I5T|1|A|A|1315
9I5T|1|A|A|1316
9I5T|1|A|C|1317
9I5T|1|A|C|1318

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain V

Large ribosomal subunit protein uL22