HL_9I5T_025

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

9I5T|1|A|A|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_025 not in the Motif Atlas

Geometric match to HL_8B0X_067

Geometric discrepancy: 0.068

The information below is about HL_8B0X_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9I5T|1|A|C|1602
9I5T|1|A|A|1603
9I5T|1|A|A|1604
9I5T|1|A|G|1605

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2