HL_9I5T_026

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9I5T|1|A|A|1650, 9I5T|1|A|A|1652, 9I5T|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_026 not in the Motif Atlas

Geometric match to HL_8B0X_068

Geometric discrepancy: 0.0584

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9I5T|1|A|C|1648
9I5T|1|A|G|1649
9I5T|1|A|A|1650
9I5T|1|A|C|1651
9I5T|1|A|A|1652
9I5T|1|A|C|1653
9I5T|1|A|A|1654
9I5T|1|A|G|1655

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL22