HL_9I5T_027

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUGAGUAUA

Length

9 nucleotides

Bulged bases

9I5T|1|A|U|1670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_027 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.1299

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I5T|1|A|U|1665
9I5T|1|A|U|1666
9I5T|1|A|G|1667
9I5T|1|A|A|1668
9I5T|1|A|G|1669
9I5T|1|A|U|1670
9I5T|1|A|A|1671
9I5T|1|A|U|1672
9I5T|1|A|A|1673

Current chains

Chain A

23S rRNA

Nearby chains