HL_9I5T_030
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAACAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9I5T|1|A|A|1789, 9I5T|1|A|A|1790, 9I5T|1|A|C|1791, 9I5T|1|A|A|1795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5T_030 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.034
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9I5T|1|A|U|1786
9I5T|1|A|U|1787
9I5T|1|A|U|1788
9I5T|1|A|A|1789
9I5T|1|A|A|1790
9I5T|1|A|C|1791
9I5T|1|A|A|1792
9I5T|1|A|A|1793
9I5T|1|A|A|1794
9I5T|1|A|A|1795
9I5T|1|A|A|1796
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain D
- Large ribosomal subunit protein uL2
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