HL_9I5T_031

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_031 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.0737

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9I5T|1|A|A|1815
9I5T|1|A|G|1816
9I5T|1|A|C|1817
9I5T|1|A|A|1818
9I5T|1|A|A|1819
9I5T|1|A|U|1820

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain D

Large ribosomal subunit protein uL2