HL_9I5T_033
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9I5T|1|A|A|2040, 9I5T|1|A|A|2041, 9I5T|1|A|G|2042
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5T_033 not in the Motif Atlas
- Geometric match to HL_8B0X_078
- Geometric discrepancy: 0.0738
- The information below is about HL_8B0X_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|G|2037
9I5T|1|A|U|2038
9I5T|1|A|G|2039
9I5T|1|A|A|2040
9I5T|1|A|A|2041
9I5T|1|A|G|2042
9I5T|1|A|A|2043
9I5T|1|A|U|2044
9I5T|1|A|G|2045
9I5T|1|A|C|2046
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain U
- Large ribosomal subunit protein bL21
Coloring options: