HL_9I5T_034

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG(OMG)GGUGG

Length

9 nucleotides

Bulged bases

9I5T|1|A|G|2251

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_034 not in the Motif Atlas

Geometric match to HL_8B0X_080

Geometric discrepancy: 0.074

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9I5T|1|A|C|2249
9I5T|1|A|U|2250
9I5T|1|A|G|2251
9I5T|1|A|OMG|2252
9I5T|1|A|G|2253
9I5T|1|A|G|2254
9I5T|1|A|U|2255
9I5T|1|A|G|2256
9I5T|1|A|G|2257

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL16

Chain Z

Large ribosomal subunit protein bL27