HL_9I5T_036

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_036 not in the Motif Atlas

Geometric match to HL_4WF9_052

Geometric discrepancy: 0.1419

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9I5T|1|A|U|2325
9I5T|1|A|G|2326
9I5T|1|A|U|2327
9I5T|1|A|A|2328
9I5T|1|A|A|2329
9I5T|1|A|U|2330
9I5T|1|A|G|2331
9I5T|1|A|G|2332

Current chains

Chain A

23S rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein uL5

Chain P

Large ribosomal subunit protein uL16

Chain Z

Large ribosomal subunit protein bL27