HL_9I5T_037

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_037 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1965

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I5T|1|A|C|2356
9I5T|1|A|A|2357
9I5T|1|A|A|2358
9I5T|1|A|A|2359
9I5T|1|A|C|2360
9I5T|1|A|A|2361
9I5T|1|A|A|2362
9I5T|1|A|G|2363

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15

Chain Z

Large ribosomal subunit protein bL27