HL_9I5T_040

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGAGAAG

Length

8 nucleotides

Bulged bases

9I5T|1|A|G|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_040 not in the Motif Atlas

Geometric match to HL_8B0X_088

Geometric discrepancy: 0.1149

The information below is about HL_8B0X_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9I5T|1|A|U|2529
9I5T|1|A|G|2530
9I5T|1|A|G|2531
9I5T|1|A|A|2532
9I5T|1|A|G|2533
9I5T|1|A|A|2534
9I5T|1|A|A|2535
9I5T|1|A|G|2536

Current chains

Chain A

23S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL6

Chain 8

Large ribosomal subunit protein bL36