HL_9I5T_046

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAAGACUAU

Length

9 nucleotides

Bulged bases

9I5T|1|A|A|2806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_046 not in the Motif Atlas

Geometric match to HL_9DFE_065

Geometric discrepancy: 0.1141

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9I5T|1|A|A|2805
9I5T|1|A|A|2806
9I5T|1|A|A|2807
9I5T|1|A|G|2808
9I5T|1|A|A|2809
9I5T|1|A|C|2810
9I5T|1|A|U|2811
9I5T|1|A|A|2812
9I5T|1|A|U|2813

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein bL17