HL_9I5V_006

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9I5V|1|A|A|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_006 not in the Motif Atlas

Geometric match to HL_9E6Q_010

Geometric discrepancy: 0.0557

The information below is about HL_9E6Q_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9I5V|1|A|C|323
9I5V|1|A|U|324
9I5V|1|A|G|325
9I5V|1|A|G|326
9I5V|1|A|A|327
9I5V|1|A|A|328
9I5V|1|A|A|329
9I5V|1|A|G|330

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL22

Chain X

Large ribosomal subunit protein uL24